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Some Practical Suggestions for Performing NCBI BLAST Benchmarks on a pSeries 690 System

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Abstract

IBM eServer Performance Technical Report

In this study, we present a series of benchmarks carried out on pSeries servers using BLAST (Basic Local Alignment Search Tool), one of the most popular and widely used programs for similarity searching. In particular, we compare the performance of the POWER3 series with the new pSeries 690 eServer. Scalability is measured as a function of the type of query (input fragment sequence) and type of database.

Table of contents

Introduction
Design Features
BLAST
Selected Benchmarks
Results and Discussion
Summary

Profile

Publish Date
24 April 2002

Last Update
03 June 2002


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Author(s)

IBM Form Number
REDP-0437-00